Commands

The command-line program, sequence, provides several sub-commands for setting up sequence input files, running sequence, and plotting output (you can use the --help option to get help for the available subcommands). The four subcommands are the following:

• generate: Generate example input files.

• setup: Setup a folder of input files for a simulation.

• run: Run a simulation.

• plot: Plot a sequence output file.

sequence

# Sequence.

Sequence is a modular 2D (i.e., profile) sequence stratigraphic model that is written in Python and implemented within the Landlab framework. Sequence represents time-averaged fluvial and marine sediment transport via differential equations. The modular code includes components to deal with sea level changes, sediment compaction, local or flexural isostasy, and tectonic subsidence and uplift.

sequence [OPTIONS] COMMAND1 [ARGS]... [COMMAND2 [ARGS]...]...

Options

--version

Show the version and exit.

--cd <cd>

chage to directory, then execute

-s, --silent

Suppress status status messages, including the progress bar.

-v, --verbose

Also emit status messages to stderr.

generate

Generate example input files.

sequence generate [OPTIONS] {bathymetry.csv|sealevel.csv|sequence.toml|sequenc
                  e.yaml|subsidence.csv}

Options

--set <KEY=VALUE>

Set model parameters

Arguments

INFILE

Required argument

plot

Plot a Sequence output file.

sequence plot [OPTIONS] NETCDF_FILE

Options

-S, --set <set>

Set model parameters

Arguments

NETCDF_FILE

Required argument

run

Run a simulation.

## Examples

Create a folder with example input files, `bash $ mkdir sequence-example && cd sequence-example $ sequence setup ` Run a simulation using the examples input files, `bash $ sequence run `

sequence run [OPTIONS]

Options

--dry-run

do not actually run the model

--with-citations

print citations for components used

setup

Create a folder of input files for a simulation.

sequence setup [OPTIONS]

Options

--set <set>

Set model parameters