sequence package

A sequence-stratigraphic model of a 1D profile written with Landlab.

Submodules

• sequence.bathymetry module
  • BathymetryReader
    • BathymetryReader.__init__()
    • BathymetryReader.run_one_step()
    • BathymetryReader.x
    • BathymetryReader.z
• sequence.cli module
  • err()
  • out()
• sequence.errors module
  • InvalidRowError
    • InvalidRowError.__str__()
  • MissingRequiredVariable
    • MissingRequiredVariable.__str__()
  • OutputValidationError
  • ParameterMismatchError
    • ParameterMismatchError.__str__()
  • SequenceError
  • ShelfEdgeError
    • ShelfEdgeError.__str__()
  • ShorelineError
    • ShorelineError.__str__()
• sequence.fluvial module
  • Fluvial
    • Fluvial.__init__()
    • Fluvial.run_one_step()
• sequence.grid module
  • SequenceModelGrid
    • SequenceModelGrid.__init__()
    • SequenceModelGrid.from_dict()
    • SequenceModelGrid.from_toml()
    • SequenceModelGrid.get_profile()
    • SequenceModelGrid.number_of_columns
    • SequenceModelGrid.number_of_rows
    • SequenceModelGrid.x_of_column
    • SequenceModelGrid.y_of_row
• sequence.input_reader module
  • TimeVaryingConfig
    • TimeVaryingConfig.__call__()
    • TimeVaryingConfig.__init__()
    • TimeVaryingConfig.as_dict()
    • TimeVaryingConfig.diff()
    • TimeVaryingConfig.dump()
    • TimeVaryingConfig.from_file()
    • TimeVaryingConfig.from_files()
    • TimeVaryingConfig.get_loader()
    • TimeVaryingConfig.get_supported_formats()
    • TimeVaryingConfig.items()
    • TimeVaryingConfig.load_toml()
    • TimeVaryingConfig.load_yaml()
    • TimeVaryingConfig.update()
  • load_config()
• sequence.logging module
  • LoggingHandler
    • LoggingHandler.emit()
  • logging_handler()
• sequence.netcdf module
  • to_netcdf()
• sequence.output_writer module
  • OutputWriter
    • OutputWriter.__init__()
    • OutputWriter.fields
    • OutputWriter.filepath
    • OutputWriter.interval
    • OutputWriter.run_one_step()
• sequence.plot module
  • plot_file()
  • plot_grid()
  • plot_layers()
• sequence.processes module
  • Compact
    • Compact.__init__()
    • Compact.c
    • Compact.calculate()
    • Compact.excess_pressure
    • Compact.gravity
    • Compact.params
    • Compact.porosity_max
    • Compact.porosity_min
    • Compact.rho_grain
    • Compact.rho_void
    • Compact.run_one_step()
  • Fluvial
    • Fluvial.__init__()
    • Fluvial.run_one_step()
  • SeaLevelTimeSeries
    • SeaLevelTimeSeries.__init__()
    • SeaLevelTimeSeries.filepath
    • SeaLevelTimeSeries.run_one_step()
    • SeaLevelTimeSeries.time
  • SedimentFlexure
    • SedimentFlexure.__init__()
    • SedimentFlexure.calc_bulk_density()
    • SedimentFlexure.mud_bulk_density
    • SedimentFlexure.mud_density
    • SedimentFlexure.run_one_step()
    • SedimentFlexure.sand_bulk_density
    • SedimentFlexure.sand_density
    • SedimentFlexure.update()
    • SedimentFlexure.validate_density()
    • SedimentFlexure.water_density
  • ShorelineFinder
    • ShorelineFinder.__init__()
    • ShorelineFinder.alpha
    • ShorelineFinder.run_one_step()
    • ShorelineFinder.update()
  • SinusoidalSeaLevel
    • SinusoidalSeaLevel.__init__()
  • SubmarineDiffuser
    • SubmarineDiffuser.__init__()
    • SubmarineDiffuser.alpha
    • SubmarineDiffuser.calc_diffusion_coef()
    • SubmarineDiffuser.k_land
    • SubmarineDiffuser.load0
    • SubmarineDiffuser.plain_slope
    • SubmarineDiffuser.run_one_step()
    • SubmarineDiffuser.sea_level
    • SubmarineDiffuser.sediment_load
    • SubmarineDiffuser.shelf_slope
    • SubmarineDiffuser.shoreface_height
    • SubmarineDiffuser.time
    • SubmarineDiffuser.wave_base
  • SubsidenceTimeSeries
    • SubsidenceTimeSeries.__init__()
    • SubsidenceTimeSeries.filepath
    • SubsidenceTimeSeries.run_one_step()
    • SubsidenceTimeSeries.subsidence_rate
    • SubsidenceTimeSeries.time
• sequence.sea_level module
  • SeaLevelTimeSeries
    • SeaLevelTimeSeries.__init__()
    • SeaLevelTimeSeries.filepath
    • SeaLevelTimeSeries.run_one_step()
    • SeaLevelTimeSeries.time
  • SinusoidalSeaLevel
    • SinusoidalSeaLevel.__init__()
• sequence.sediment_flexure module
  • DynamicFlexure
    • DynamicFlexure.__init__()
    • DynamicFlexure.calc_dynamic_deflection()
    • DynamicFlexure.calc_isostasy_fraction()
    • DynamicFlexure.isostasy_time
    • DynamicFlexure.validate_isostasy_time()
  • SedimentFlexure
    • SedimentFlexure.__init__()
    • SedimentFlexure.calc_bulk_density()
    • SedimentFlexure.mud_bulk_density
    • SedimentFlexure.mud_density
    • SedimentFlexure.run_one_step()
    • SedimentFlexure.sand_bulk_density
    • SedimentFlexure.sand_density
    • SedimentFlexure.update()
    • SedimentFlexure.validate_density()
    • SedimentFlexure.water_density
  • WaterFlexure
    • WaterFlexure.__init__()
    • WaterFlexure.calc_flexure_due_to_water()
    • WaterFlexure.calc_half_plane_deflection()
    • WaterFlexure.calc_water_loading()
    • WaterFlexure.run_one_step()
    • WaterFlexure.update()
• sequence.sequence module
  • Sequence
    • Sequence.__init__()
    • Sequence.add_layer()
    • Sequence.layer_properties()
    • Sequence.layer_reducers()
    • Sequence.plot()
    • Sequence.run()
    • Sequence.time
    • Sequence.update()
• sequence.sequence_model module
  • SequenceModel
    • SequenceModel.ALL_PROCESSES
    • SequenceModel.DEFAULT_PARAMS
    • SequenceModel.LONG_NAME
    • SequenceModel.__init__()
    • SequenceModel.advance_components()
    • SequenceModel.clock
    • SequenceModel.components
    • SequenceModel.grid
    • SequenceModel.layer_properties()
    • SequenceModel.layer_reducers()
    • SequenceModel.load_grid()
    • SequenceModel.load_processes()
    • SequenceModel.run()
    • SequenceModel.run_one_step()
    • SequenceModel.set_params()
    • SequenceModel.timer
• sequence.shoreline module
  • ShorelineFinder
    • ShorelineFinder.__init__()
    • ShorelineFinder.alpha
    • ShorelineFinder.run_one_step()
    • ShorelineFinder.update()
  • find_shelf_edge()
  • find_shelf_edge_by_curvature()
  • find_shoreline()
  • find_shoreline_index()
• sequence.submarine module
  • SubmarineDiffuser
    • SubmarineDiffuser.__init__()
    • SubmarineDiffuser.alpha
    • SubmarineDiffuser.calc_diffusion_coef()
    • SubmarineDiffuser.k_land
    • SubmarineDiffuser.load0
    • SubmarineDiffuser.plain_slope
    • SubmarineDiffuser.run_one_step()
    • SubmarineDiffuser.sea_level
    • SubmarineDiffuser.sediment_load
    • SubmarineDiffuser.shelf_slope
    • SubmarineDiffuser.shoreface_height
    • SubmarineDiffuser.time
    • SubmarineDiffuser.wave_base
• sequence.subsidence module
  • SubsidenceTimeSeries
    • SubsidenceTimeSeries.__init__()
    • SubsidenceTimeSeries.filepath
    • SubsidenceTimeSeries.run_one_step()
    • SubsidenceTimeSeries.subsidence_rate
    • SubsidenceTimeSeries.time