sequence

• sequence package
  • Submodules
  • sequence.bathymetry module
    • BathymetryReader
      • BathymetryReader.__init__()
      • BathymetryReader.run_one_step()
      • BathymetryReader.x
      • BathymetryReader.z
  • sequence.cli module
    • err()
    • out()
  • sequence.errors module
    • InvalidRowError
      • InvalidRowError.__str__()
    • MissingRequiredVariable
      • MissingRequiredVariable.__str__()
    • OutputValidationError
    • ParameterMismatchError
      • ParameterMismatchError.__str__()
    • SequenceError
    • ShelfEdgeError
      • ShelfEdgeError.__str__()
    • ShorelineError
      • ShorelineError.__str__()
  • sequence.fluvial module
    • Fluvial
      • Fluvial.__init__()
      • Fluvial.run_one_step()
  • sequence.grid module
    • SequenceModelGrid
      • SequenceModelGrid.__init__()
      • SequenceModelGrid.from_dict()
      • SequenceModelGrid.from_toml()
      • SequenceModelGrid.get_profile()
      • SequenceModelGrid.number_of_columns
      • SequenceModelGrid.number_of_rows
      • SequenceModelGrid.x_of_column
      • SequenceModelGrid.y_of_row
  • sequence.input_reader module
    • TimeVaryingConfig
      • TimeVaryingConfig.__call__()
      • TimeVaryingConfig.__init__()
      • TimeVaryingConfig.as_dict()
      • TimeVaryingConfig.diff()
      • TimeVaryingConfig.dump()
      • TimeVaryingConfig.from_file()
      • TimeVaryingConfig.from_files()
      • TimeVaryingConfig.get_loader()
      • TimeVaryingConfig.get_supported_formats()
      • TimeVaryingConfig.items()
      • TimeVaryingConfig.load_toml()
      • TimeVaryingConfig.load_yaml()
      • TimeVaryingConfig.update()
    • load_config()
  • sequence.logging module
    • LoggingHandler
      • LoggingHandler.emit()
    • logging_handler()
  • sequence.netcdf module
    • to_netcdf()
  • sequence.output_writer module
    • OutputWriter
      • OutputWriter.__init__()
      • OutputWriter.fields
      • OutputWriter.filepath
      • OutputWriter.interval
      • OutputWriter.run_one_step()
  • sequence.plot module
    • plot_file()
    • plot_grid()
    • plot_layers()
  • sequence.processes module
    • Compact
      • Compact.__init__()
      • Compact.c
      • Compact.calculate()
      • Compact.excess_pressure
      • Compact.gravity
      • Compact.params
      • Compact.porosity_max
      • Compact.porosity_min
      • Compact.rho_grain
      • Compact.rho_void
      • Compact.run_one_step()
    • Fluvial
      • Fluvial.__init__()
      • Fluvial.run_one_step()
    • SeaLevelTimeSeries
      • SeaLevelTimeSeries.__init__()
      • SeaLevelTimeSeries.filepath
      • SeaLevelTimeSeries.run_one_step()
      • SeaLevelTimeSeries.time
    • SedimentFlexure
      • SedimentFlexure.__init__()
      • SedimentFlexure.calc_bulk_density()
      • SedimentFlexure.mud_bulk_density
      • SedimentFlexure.mud_density
      • SedimentFlexure.run_one_step()
      • SedimentFlexure.sand_bulk_density
      • SedimentFlexure.sand_density
      • SedimentFlexure.update()
      • SedimentFlexure.validate_density()
      • SedimentFlexure.water_density
    • ShorelineFinder
      • ShorelineFinder.__init__()
      • ShorelineFinder.alpha
      • ShorelineFinder.run_one_step()
      • ShorelineFinder.update()
    • SinusoidalSeaLevel
      • SinusoidalSeaLevel.__init__()
    • SubmarineDiffuser
      • SubmarineDiffuser.__init__()
      • SubmarineDiffuser.alpha
      • SubmarineDiffuser.calc_diffusion_coef()
      • SubmarineDiffuser.k_land
      • SubmarineDiffuser.load0
      • SubmarineDiffuser.plain_slope
      • SubmarineDiffuser.run_one_step()
      • SubmarineDiffuser.sea_level
      • SubmarineDiffuser.sediment_load
      • SubmarineDiffuser.shelf_slope
      • SubmarineDiffuser.shoreface_height
      • SubmarineDiffuser.time
      • SubmarineDiffuser.wave_base
    • SubsidenceTimeSeries
      • SubsidenceTimeSeries.__init__()
      • SubsidenceTimeSeries.filepath
      • SubsidenceTimeSeries.run_one_step()
      • SubsidenceTimeSeries.subsidence_rate
      • SubsidenceTimeSeries.time
  • sequence.sea_level module
    • SeaLevelTimeSeries
      • SeaLevelTimeSeries.__init__()
      • SeaLevelTimeSeries.filepath
      • SeaLevelTimeSeries.run_one_step()
      • SeaLevelTimeSeries.time
    • SinusoidalSeaLevel
      • SinusoidalSeaLevel.__init__()
  • sequence.sediment_flexure module
    • DynamicFlexure
      • DynamicFlexure.__init__()
      • DynamicFlexure.calc_dynamic_deflection()
      • DynamicFlexure.calc_isostasy_fraction()
      • DynamicFlexure.isostasy_time
      • DynamicFlexure.validate_isostasy_time()
    • SedimentFlexure
      • SedimentFlexure.__init__()
      • SedimentFlexure.calc_bulk_density()
      • SedimentFlexure.mud_bulk_density
      • SedimentFlexure.mud_density
      • SedimentFlexure.run_one_step()
      • SedimentFlexure.sand_bulk_density
      • SedimentFlexure.sand_density
      • SedimentFlexure.update()
      • SedimentFlexure.validate_density()
      • SedimentFlexure.water_density
    • WaterFlexure
      • WaterFlexure.__init__()
      • WaterFlexure.calc_flexure_due_to_water()
      • WaterFlexure.calc_half_plane_deflection()
      • WaterFlexure.calc_water_loading()
      • WaterFlexure.run_one_step()
      • WaterFlexure.update()
  • sequence.sequence module
    • Sequence
      • Sequence.__init__()
      • Sequence.add_layer()
      • Sequence.layer_properties()
      • Sequence.layer_reducers()
      • Sequence.plot()
      • Sequence.run()
      • Sequence.time
      • Sequence.update()
  • sequence.sequence_model module
    • SequenceModel
      • SequenceModel.ALL_PROCESSES
      • SequenceModel.DEFAULT_PARAMS
      • SequenceModel.LONG_NAME
      • SequenceModel.__init__()
      • SequenceModel.advance_components()
      • SequenceModel.clock
      • SequenceModel.components
      • SequenceModel.grid
      • SequenceModel.layer_properties()
      • SequenceModel.layer_reducers()
      • SequenceModel.load_grid()
      • SequenceModel.load_processes()
      • SequenceModel.run()
      • SequenceModel.run_one_step()
      • SequenceModel.set_params()
  • sequence.shoreline module
    • ShorelineFinder
      • ShorelineFinder.__init__()
      • ShorelineFinder.alpha
      • ShorelineFinder.run_one_step()
      • ShorelineFinder.update()
    • find_shelf_edge()
    • find_shelf_edge_by_curvature()
    • find_shoreline()
    • find_shoreline_index()
  • sequence.submarine module
    • SubmarineDiffuser
      • SubmarineDiffuser.__init__()
      • SubmarineDiffuser.alpha
      • SubmarineDiffuser.calc_diffusion_coef()
      • SubmarineDiffuser.k_land
      • SubmarineDiffuser.load0
      • SubmarineDiffuser.plain_slope
      • SubmarineDiffuser.run_one_step()
      • SubmarineDiffuser.sea_level
      • SubmarineDiffuser.sediment_load
      • SubmarineDiffuser.shelf_slope
      • SubmarineDiffuser.shoreface_height
      • SubmarineDiffuser.time
      • SubmarineDiffuser.wave_base
  • sequence.subsidence module
    • SubsidenceTimeSeries
      • SubsidenceTimeSeries.__init__()
      • SubsidenceTimeSeries.filepath
      • SubsidenceTimeSeries.run_one_step()
      • SubsidenceTimeSeries.subsidence_rate
      • SubsidenceTimeSeries.time
  • Module contents